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Details of npp-1 gene in Caenorhabditis elegans
IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Link outs | Gene Name | Alias | Uniprot ID | SwissProt ID | NCBI gene ID | W.Base gene ID | W.Base accession | Description | Source |
|
| npp-1 | --- | Q9U3B9 | --- | 177836 | --- | K07F5.13 | Protein NPP-1, isoform c [Source:RefSeq peptide Acc:NP_501770] | ENSEMBL |
Phenotypes
embryonic lethal, EMS anterior extension fails early emb, exaggerated asynchrony early emb, germ cell mitosis variant, large cytoplasmic granules early emb, larval arrest, larval lethal, lethal, maternal sterile, multiple nuclei early emb, nuclear morphology variation early emb, nucleus reforms cell division remnant early emb, P0 spindle position defective early emb, P0 spindle rotation failure early emb, P1 aster defective early emb, P2 EMS synchronous division early emb, pattern of transgene expression variant, postembryonic development variant, pronuclear migration defective early emb, pronuclear morphology defective early emb, pronuclear nuclear appearance defective early emb, protein aggregation variant, receptor mediated endocytosis defective, RNAi resistant, rudimentary gonad, slow growth, somatic transgene silencing variant, spindle orientation variant AB or P1 early emb, sterile, sterile progeny, synchronous second division early emb, transgene expression increased, transgene subcellular localization variant, Variant.
Orthologs in other species | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| H. sapiens | M. musculus | D. melonogaster | S. purpuratus | ||||||
| NUP54 | Nup54 | Nup54 | Sp-Nup54 | ||||||
| Conserved gene 1 |
Conserved gene 2 |
Conserved score |
C. elegans gene 1 |
C. elegans gene 2 |
Complex ID | Corum | BioGrid | IRefWeb | Novelty |
|---|---|---|---|---|---|---|---|---|---|
| RAE1 | GOT1 | 0.655844389 | npp-17 | T01C8.5 | cpx13 | no | yes | no | Known |
| RAE1 | AASDHPPT | 0.35384214 | npp-17 | T04G9.4 | cpx153; cpx316 | no | yes | no | Known |
| RAE1 | NUP98 | 0.98554315 | npp-17 | npp-10 | cpx153 | no | yes | no | Known |
| NUP54 | NUP98 | 0.309198396 | npp-1 | npp-10 | cpx153 | no | yes | yes | Known |
| RAE1 | PDCD6IP | 0.028727974 | npp-17 | alx-1 | cpx13 | no | no | no | Novel |
| GPT2 | RAE1 | 0.034174691 | C32F10.8 | npp-17 | cpx13 | no | no | no | Novel |
| OXCT1 | RAE1 | 0.254975138 | C05C10.3 | npp-17 | cpx316 | no | no | no | Novel |
| Conserved gene 1 |
Conserved gene 2 |
Conserved score |
C. elegans gene 1 |
C. elegans gene 2 |
|---|---|---|---|---|
| RAE1 | LGALS1 | 0.094407659 | npp-17 | lec-6 |
| SOD1 | RAE1 | 0.074592652 | sod-1 | npp-17 |
| ETFA | NUP210 | 0.08201295 | F27D4.1 | npp-12 |
| ACLY | NUP210L | 0.086402022 | D1005.1, acly-2 | npp-12 |
| NUP214 | CSRP1 | 0.073238699 | npp-14 | mlp-1 |
| RAE1 | QDPR | 0.087151382 | npp-17 | qdpr-1 |
| SFPQ | NUP210 | 0.078724749 | psf-1 | npp-12 |
| NUP214 | TXNDC9 | 0.097859422 | npp-14 | tag-170 |
| MCM3 | NUP62 | 0.189200637 | mcm-3 | npp-11 |
| NUP93 | FGG | 0.079734072 | npp-13 | Y43C5A.2, C49C8.5 |
| SARS | NUP210 | 0.072148107 | srs-2 | npp-12 |
| NUP214 | CFL1 | 0.080346651 | npp-14 | unc-60 |
| RAE1 | HSD17B14 | 0.076482184 | npp-17 | D1054.8, R05D8.7, dhs-14, dhs-23, F25D1.5, R05D8.9, F02C12.2, dhs-15, Y47G6A.22, Y47G6A.21 |
| RAE1 | HINT1 | 0.080965257 | npp-17 | hint-1 |
| RAE1 | PABPC4 | 0.162814118 | npp-17 | pab-1, pab-2 |
| ACOX1 | NUP62 | 0.100866595 | F59F4.1, acox-1, F08A8.4, F08A8.3, F08A8.2, C48B4.1 | npp-11 |
| RAE1 | ESD | 0.100515905 | npp-17 | Y48G10A.1 |
| NONO | NUP210 | 0.077283905 | psf-1 | npp-12 |
| RAE1 | FKBP1A | 0.122002613 | npp-17 | fkb-2 |
| NUP93 | UCHL3 | 0.071602813 | npp-13 | ubh-1, ubh-3, ubh-2 |
| RAE1 | PABPC1 | 0.190491146 | npp-17 | pab-1, pab-2 |
| RAE1 | TAGLN2 | 0.139344395 | npp-17 | cpn-2, cpn-1 |