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Metazoan complexes |
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Details of rpt-6 gene in Caenorhabditis elegans
IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Link outs | Gene Name | Alias | Uniprot ID | SwissProt ID | NCBI gene ID | W.Base gene ID | W.Base accession | Description | Source |
|
| rpt-6 | --- | Q9XTT9 | --- | 176661 | --- | Y49E10.1 | Protein RPT-6 [Source:RefSeq peptide Acc:NP_499609] | ENSEMBL |
Phenotypes
chromosome alignment variant, early larval lethal, embryonic lethal, larval arrest, lethal, locomotion variant, lysosome-related organelle morphology variant, maternal sterile, mitotic metaphase to anaphase transition defect, organism morphology variant, postembryonic development variant, RAB-11 recycling endosome localization variant, RAB-11 recycling endosome morphology variant, shortened life span, sister chromatid segregation defective early emb, slow growth, spindle assembly defective early emb, spindle position defective early emb, transgene subcellular localization variant, Variant.
Orthologs in other species | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| H. sapiens | M. musculus | D. melonogaster | S. purpuratus | ||||||
| ANLN | Anln | scra | Sp-Hypp_1031 | ATP8A1 | Atp8a1 | CG42321 | Sp-Atp8a1_1... | ATP8A2 | Atp8a2 | CG42321 | Sp-Atp8a1_1... | PSMC5 | Psmc5 | Pros45 | Sp-Psmc5 | SNRPE | Snrpe | SmE | Sp-SnrpE... | SNRPEP3 | --- | SmE | Sp-SnrpE... |
| Conserved gene 1 |
Conserved gene 2 |
Conserved score |
C. elegans gene 1 |
C. elegans gene 2 |
Complex ID | Corum | BioGrid | IRefWeb | Novelty |
|---|---|---|---|---|---|---|---|---|---|
| PSMD9 | PSMC5 | 1 | psmd-9 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMC5 | ADRM1 | 0.636950423 | rpt-6 | C56G2.7 | cpx1 | no | yes | no | Known |
| PSMD7 | PSMC5 | 1 | rpn-8 rpn-8 | rpt-6 F56F11.4 | cpx1 | yes | yes | yes | Known |
| PSMA1 | PSMC5 | 0.999999969 | pas-6 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMD11 | PSMC5 | 1 | rpn-6.1 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMC4 | PSMC5 | 1 | rpt-3 rpt-3 | rpt-6 F56F11.4 | cpx1 | yes | yes | yes | Known |
| PSMD2 | PSMC5 | 1 | rpn-1 rpn-1 | F56F11.4 rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMA5 | PSMC5 | 0.99998991 | pas-5 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMB2 | PSMC5 | 0.999999985 | pbs-4 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMA2 | PSMC5 | 0.988569511 | pas-2 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMB6 | PSMC5 | 0.99999652 | pbs-1 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMA6 | PSMC5 | 0.82976698 | pas-1 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMB3 | PSMC5 | 0.999998868 | pbs-3 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMC1 | PSMC5 | 1 | rpt-2 rpt-2 | F56F11.4 rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMD13 | PSMC5 | 1 | rpn-9 rpn-9 | F56F11.4 rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMA8 | PSMC5 | 0.940307205 | pas-4 | rpt-6 | cpx1 | no | yes | no | Known |
| PSMC6 | PSMC5 | 1 | rpt-4 rpt-4 | rpt-6 F56F11.4 | cpx1 | yes | yes | yes | Known |
| PSMC2 | PSMC5 | 1 | rpt-1 rpt-1 | rpt-6 F56F11.4 | cpx1 | yes | yes | yes | Known |
| PSMB5 | PSMC5 | 0.999999988 | pbs-5 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMC3 | PSMC5 | 1 | rpt-5 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMD14 | PSMC5 | 1 | rpn-11 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMD1 | PSMC5 | 1 | rpn-2 rpn-2 | rpt-6 F56F11.4 | cpx1 | yes | yes | yes | Known |
| PSMB7 | PSMC5 | 0.980336834 | pbs-2 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMD4 | PSMC5 | 1 | rpn-10 | rpt-6 | cpx1 | yes | yes | yes | Known |
| PSMB1 | PSMC5 | 0.999999499 | pbs-6 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMB8 | PSMC5 | 0.994771532 | pbs-5 | rpt-6 | cpx1 | no | yes | no | Known |
| PSMB4 | PSMC5 | 0.983812089 | pbs-7 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMA7 | PSMC5 | 0.999991593 | pas-4 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMA4 | PSMC5 | 0.999998747 | pas-3 | rpt-6 | cpx1 | yes | yes | no | Known |
| PSMC5 | PSMA3 | 0.992126611 | rpt-6 | pas-7 | cpx1 | yes | yes | no | Known |
| PSMC5 | PSMD10 | 1 | rpt-6 | F40G9.17 | cpx1 | yes | yes | yes | Known |
| PSMC5 | PSMD12 | 1 | rpt-6 | rpn-5 | cpx1 | yes | yes | yes | Known |
| PSMC5 | PSMD3 | 1 | rpt-6 | rpn-3 | cpx1 | yes | yes | yes | Known |
| PSMC5 | PSMD6 | 1 | rpt-6 | rpn-7 | cpx1 | yes | yes | yes | Known |
| PSMC5 | PSMD8 | 1 | rpt-6 | rpn-12 | cpx1 | yes | yes | yes | Known |
| Conserved gene 1 |
Conserved gene 2 |
Conserved score |
C. elegans gene 1 |
C. elegans gene 2 |
|---|---|---|---|---|
| DNAJA4 | PSMC5 | 0.130195053 | dnj-12 | rpt-6, F56F11.4 |
| ABCC1 | PSMC5 | 0.10035229 | mrp-2, mrp-1 | rpt-6, F56F11.4 |
| DNAJA1 | PSMC5 | 0.076102755 | dnj-12 | rpt-6, F56F11.4 |
| CAD | PSMC5 | 0.181429819 | pyr-1 | rpt-6, F56F11.4 |
| USP14 | PSMC5 | 0.278101906 | usp-14 | rpt-6, F56F11.4 |
| PSMC5 | RPN1 | 0.159178587 | rpt-6, F56F11.4 | ribo-1 |
| PSMC5 | RAD23B | 0.243221617 | rpt-6, F56F11.4 | rad-23 |
| PSMC5 | UQCRC2 | 0.209888134 | rpt-6, F56F11.4 | ucr-2.2, ucr-2.3, ucr-2.1 |
| PSMC5 | IDH3A | 0.074961869 | rpt-6, F56F11.4 | F43G9.1 |